Data Provider

General Function Checklist

•  All Default DataProviders appear in the DataProviderManagementGui table

• • Observation:  The table matches the image below
    • 

• Confirm the following species / genome versions are available 
  • Arabidopsis thaliana / A_thaliana_Jun2009
    • Observation: Available Data Tree appears with the following sites (IgbQuickload, Pollen, and Cytokinin)
      • 
  • Homo Sapiens/ H_sapiens_Dec_2013
    • Available data sites include UCSC and IgbQuickload
      
      • 
    • Confirm the Cytobands track is visible
      • 

•  Load a bed file, a bam file, a bedgraph file, and some sequence data to ensure basic file parsing from the data providers is working as expected. (Load these directly from the Data Access Tree, not from the urls)
  • Bed File
  • Bam File
  • Bedgraph File
  • Load Sequence

• Load a few tracks from the UCSC DAS data source (should be visible on Human/Mouse species)

• Adding/Removing DataProviders
  • Add a quickload data provider and confirm it is working as expected
    • Go to the Arabidopsis thaliana/A_thaliana_Jun_2009 genome version
    • Navigate to the File->Preferences->Data Sources tab
    • Click the "Add..." button
    • Enter in a valid quickload url (e.g. http://igbquickload.org/brokenQuickloads/emptyFileTagQuickload/) - TODO find a better example since this site is designed to trigger a warning.
    • Enter a name for this quickload site and click the "Submit" button
    • Observations:
      • The quickload site shows up in the "Available Data" tree
      • The data sets listed in the tree can be loaded 
    • Confirm restarting IGB does not cause the newly added site to be forgotten
  • Add a few "Secured" quickload sites and confirm they are working as expected
    • Following the same steps listed above in the previous step, add the following two sites
      • igbquickload.org/secureQuickloadTestSites/secureSiteTest
        • username/password 
          • guest/guest
      • igbquickload.org/secureQuickloadTestSites/secureSiteTest2
        • username/password
          • guest2/guest2
    • Navigate to the Arabidopsis thaliana Jun_2009 genome version
      • Confirm the two sites are listed the "Available Data" tree and data can be loaded from each site
    • Confirm you were not prompted for a password for any site more than a single time per session
    • Confirm restarting IGB does not cause the newly added sites to be forgotten
    • Confirm that if you checked the "Save Password" option you are not promted for your password again on restarting IGB