General Function Checklist
All Default DataProviders appear in the DataProviderManagementGui table
- mac
- linux
- windows
- Observation: The table lists several Quickload sites. (They may be different from those shown below.) If any are shown with a red background, that means that there is a problem with the site - IGB can't reach it. This is a bug and should be reported.
Confirm that clicking on a [i] icon in the rightmost 'information' column of the Data Sources window above opens a window with fields and values similar to the example below:
- mac
- linux
- windows
Confirm that cells in the above information window contain information related to their respective data source
- mac
- linux
- windows
Confirm that closing this window and opening another shows correctly updated information
- mac
- linux
- windows
Confirm that the information window functions for the DAS data source type
- mac
- linux
- windows
Confirm the following species / genome versions are available
- mac
- linux
- windows
- Arabidopsis thaliana / A_thaliana_Jun_2009
- Observation: Available Data Tree appears with several sites. (They may be different from those shown below.)
- Observation: Available Data Tree appears with several sites. (They may be different from those shown below.)
- Homo Sapiens/ H_sapiens_Dec_2013
- Available data should list some data sets. (They may vary from those shown below.)
- Available data should list some data sets. (They may vary from those shown below.)
- Arabidopsis thaliana / A_thaliana_Jun_2009
Important: Confirm that for the human genome assembly, the Cytobands track is visible
- mac
- linux
- windows
In the human genome
Navigate to chr1:45,691,287-45,691,329.
Click the Load Sequence button.
Sequence loads and is visible (ATCG)
- mac
- linux
- windows
Adding/Removing/Editing DataProviders
Add a QuickLoad data provider and confirm it is working as expected
- Go to the Arabidopsis thaliana/A_thaliana_Jun_2009 genome version
- Navigate to the File->Preferences->Data Sources tab
- Click the "Add..." button
- Name: myQuickload
- Type: Quickload
- URL: http://www.igbquickload.org/quickload/
- Click the "Submit" button
The quickload site shows up in the "Available Data" tree and the data sets listed in the tree can be loaded
- mac
- linux
- windows
Confirm restarting IGB does not cause the newly added site to be forgotten
- mac
- linux
- windows
Ensure that the edit button in the Data Sources window opens a new window and allows a user to modify the data source URL or to choose a local folder. Note that default data sources cannot be modified.
- mac
- linux
- windows
Ensure that data sources can be deleted using the Remove button in the Data Sources window
- mac
- linux
- windows
Add a few "Secured" quickload sites and confirm they are working as expected
- Following the same steps listed above in the previous step, add the following two sites
http://igbquickload.org/secureQuickloadTestSites/secureSiteTest
username/password
- guest/guest
http://igbquickload.org/secureQuickloadTestSites/secureSiteTest2
username/password
- guest2/guest2
- mac
- linux
- windows
Navigate to the Arabidopsis thaliana Jun_2009 genome version
Confirm the two sites are listed the "Available Data" tree and data can be loaded from each site
- mac
- linux
- windows
Confirm you were not prompted for a password for any site more than a single time per session
- mac
- linux
- windows
Confirm restarting IGB does not cause the newly added sites to be forgotten
- mac
- linux
- windows
Confirm that if you checked the "Save Password" option you are not prompted for your password again on restarting IGB
- mac
- linux
- windows