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1. Zooming in on the gene or region of interest.
2. Click on Load Data.
3. Right-click on the track, and select Track Operations - > FindJunctions - > Use Default

FindJunctions will appear as a new track. Brackets represent spice splice junctions across exons. Each bracket includes the The number of reads supporting each splice junction .In this example you can see that exclusion of the 5th exon is supported by nine readsis shown above each bracket.

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The default behavior for FindJunctions is to identify split reads with a minimum of five basepairs base pairs on either side of the exon.

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1. Right-clicking on the track, and select Track Operations - > FindJunctions - > Configure…
2. Inputting a new number.

How to get FindJunctions

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