species.txt
IGB has a file called species.txt that contains the species name, the common name and any other synonym for that species in a tab delimited format. These are the species that IGB will recognize if you create a new genome, even if the species does not appear in the Data Access > Choose:(species) drop down menu. If there is a species you would like added, please let us know on the
Ailuropoda melanoleuca Giant panda
Anolis carolinensis Anole Lizard
Anopheles gambiae Mosquito
Apis mellifera European honey bee
Aplysia californica California sea hare
Arabidopsis thaliana Thale cress
Arbacia punctulata Purple-spined sea urchin
Bos taurus Cow
Brachypodium distachyon Purple false brome
Branchiostoma floridae Lancet
Brassica rapa Field mustard
Caenorhabditis brenneri C. brenneri (nematode)
Caenorhabditis briggsae C. briggsae (nematode)
Caenorhabditis elegans C. elegans (nematode)
Caenorhabditis japonica C. japonica (nematode)
Caenorhabditis remanei C. remanei (nematode)
Callithrix jacchus Common marmoset
Canis lupus familiaris Dog
Carica papaya Papaya
Cavia porcellus Guinea pig
Chlamydomanas reinhardtii motile single-celled green alga
Choloepus hoffmanni Two-toed sloth
Ciona intestinalis vase tunicate (sea squirt)
Ciona savignyi Pacific sea squirt
Cucumis sativus Cucumber
Danio rerio Zebrafish
Dasypus novemcinctus Nine-banded armadillo
Dictyostelium discoideum sequenced slice mold strain
Drosophila ananassae D. ananassae (fruit fly)
Drosophila erecta D. erecta (fruit fly)
Drosophila grimshawi D. grimshawi (fruit fly)
Drosophila melanogaster Common fruit fly
Drosophila mojavensis D. mojavensis (fruit fly)
Drosophila persimilis D. persimilis (fruit fly)
Drosophila pseudoobscura D. pseudoobscura (fruit fly)
Drosophila sechellia D. sechelia (fruit fly)
Drosophila simulans D. simulans (fruit fly)
Drosophila virilis D. virilis (fruit fly)
Drosophila yakuba D. yakuba (fruit fly)
Dipodomys ordii Kangaroo rat
Echinops telfairi Lesser hedgehog tenrec
Equus caballus Horse
Erinaceus europaeus European hedgehog
Escherichia coli E. coli
Euprymna scolopes Hawaiian bobtail squid
Felis catus House Cat
Gallus gallus Chicken
Gasterosteus aculeatus Stickleback
Glycine max Soybean
Gorilla gorilla Western gorilla
Gossypium hirsutum Upland cotton
Homo sapiens Human
Hordeum vulgare Barley
Lemna gibba Gibbous duckweed
Loligo pealeii longfin inshore squid
Loxodonta africana African bush elephant
Lotusjaponicus a model legume
Macaca mulatta Rhesus monkey
Macropus eugenii Tammar wallaby
Manihot esculenta Cassava
Medicago truncatula Barrel medic
Meleagris gallopavo Turkey
Microcebus murinus Gray mouse lemur
Mimulus guttatus Monkey flower
Monodelphis domestica Opossum
Mus musculus House mouse
Mycobacterium abscessus M. abcessus
Mycobacterium smegmatis M. smegmatis
Mycobacterium tuberculosis M. tuberculosis
Myotis lucifugus Little brown bat
Nicotiana tabacum Tobacco
Ochotona princeps American pika
Ornithorhynchus anatinus Platypus
Oryctolagus cuniculus European rabbit
Oryza sativa Rice
Oryzias latipes Medaka
Otolemur garnettii Nothern greater galago
Ostreococcus lucimarinus O. lucimarinus
Pan troglodytes Chimp
Petromyzon marinus Lamprey
Physcomitrella patens Bryophyta
Pinus taeda Loblolly Pine
Plasmodium falciparum P. falciparum
Pongo pygmaeus abelii Orangutan
Populus trichocarpa Black cottonwood
Pristionchus pacificus P. pacificus (nematode)
Procavia capensis Rock hyrax
Pseudomonas aeruginosa P_aeruginosa
Pteropus vampyrus Large flying fox
Rattus norvegicus Rat
Ricinis communis Castor oil plant
Saccharomyces cerevisiae Yeast
Schizosaccharomyces pombe Fission yeast
Sigmodon hispidus Cotton rat
Sodalis glossinidius S. glossinidius
Solanum lycopersicum Tomato
Sorex araneus Eurasian shrew
Sorghum bicolor Sorghum
Spermophilus tridecemlineatus Thirteen-lined ground squirrel
Strongylocentrotus purpuratus Purple sea urchin
Sus scrofa Wild boar
Taeniopygia guttata Zebra finch
Takifugu rubripes Fugu
Tarsius syrichta Philippine tarsier
Tetraodon nigroviridis Tetraodon
Tribolium castaneum Red flour beetle
Triticum aestivum Common wheat
Tupaia belangeri Northern tree shrew
Tursiops truncatus Bottlenose dolphin
Vicugna pacos Alpaca
Vitis vinifera Common grape vine
Xenopus laevis African clawed frog
Xenopus tropicalis Pipid frog
Yersinia pestis Bubonic plague pathogen
Yersinia pseudotuberculosis Y. pseudotuberculosis
Zea mays Maize