| Commands | Options | Description | Example |
|---|---|---|---|
bringToFront | This command allows a user to bring the IGB window to the forefront of the screen, in front of all open windows. It accepts no arguments. | bringToFront | |
| deleteAllTracks | This command accepts no arguments, and will remove all loaded data sets from IGB on execution (note: including default annotation tracks for a genome version). | deleteAllTracks | |
| deleteTrack | <file or URL> | This command accepts one or more comma separated files identified by full path or URL. If a matching track is found for the specifed URL/path it will be deleted. | deleteTrack http://igbquickload.org/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gz |
| genome | <version> | Specify a genome version (e.g., H_sapiens_Mar_2006). Any genome version or synonym that's accepted by IGB is accepted here. | genome H_sapiens_Mar_2006 |
| goto | <region> | Go to a region of a chromosome (e.g., "chr1:40000-60000"). Any format that's accepted by IGB is accepted here. | goto chr1:13,640,211-13,643,760 |
| hidetrack | <file or URL> | Hide the specified track. Accepts one or more comma separated files identified by full path or URL. | hidetrack http://igbquickload.org/H_sapiens_Dec_2013/H_sapiens_Dec_2013_all_mrna.psl.gz |
| homescreen | Return to the homescreen. | homescreen | |
| load | <file or URL> | Load the specified file (identified by full path) or URL into IGB. The data set will appear in the user's Data Management table upon completion. | load http://igbquickload.org/D_melanogaster_Jul_2014/D_melanogaster_Jul_2014.bed.gz |
| loadfromserver | <serverURL datasourceURL> | This command allows a data set to be loaded from a configured "Data Source Provider" (e.g. a Quickload site). This command requires a server URL and a datasource URL. | loadfromserver http://igbquickload.org/ http://igbquickload.org/A_thaliana_Jun_2009/TAIR10_TE.bed.gz |
| loadmode | <NO_LOAD | REGION_IN_VIEW | CHROMOSOME | GENOME> <file or URL> | Change the load mode for the specified data set or file, identified by full path. | loadmode GENOME http://igbquickload.org/M_musculus_Dec_2011/M_musculus_Dec_2011_refGene.bed.gz |
| refresh | This is equivalent to clicking the Load Data button in IGB. This triggers loading of data from the active data sets available in IGB, as specified in the load command. | refresh | |
| select | <geneids> | Selects the given gene IDs, which are passed in as a comma-separated list. | select AT1G36280.2,AT1G36240.1,AT1G36340.1 |
| selectfeature | <geneids> | Selects the given gene IDs, which are passed in as a comma-separated list. | selectfeature |
| showtrack | <file or URL> | Unhide the specified track. Accepts one or more comma separated files identified by full path or URL. | showtrack http://igbquickload.org/O_sativa_japonica_Oct_2011/O_sativa_japonica_Oct_2011.bed.gz |
| sleep | <milliseconds> | Sleep the application for x milliseconds. | sleep 6000 |
| snapshot | <filename> | Export the entire frame an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshot alternativesplicing1.png |
| snapshotmainView | <filename> | Export the main view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotmainView testimage.jpeg |
| snapshotmainViewWithLabels | <filename> | Export the main view with labels an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotmainViewWithLabels imageexport1.svg |
| snapshotslicedViewWithLabels | <filename> | Export the sliced view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotslicedViewWithLabels April_1_2015.png |
| snapshotwholeFrame | <filename> | Export the entire frame to an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotwholeFrame GeneAT1G36280wholeframe.jpeg |
| unload | <file or URL> | If a matching track is found for the specified URL/path it will be deleted. Accepts one or more comma separated files identified by full path or URL. | unload http://igbquickload.org/A_thaliana_Jun_2009/cold_stress/cold_control.sm.bam |
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