| Commands | Options | Description |
|---|---|---|
bringToFront | This command allows a user to bring the IGB window to the forefront of the screen, in front of all open windows. It accepts no arguments. | |
| deleteAllTracks | This command accepts no arguments, and will remove all loaded data sets from IGB on execution (note: including default annotation tracks for a genome version). | |
| deleteTrack | <file or URL> | This command accepts one or more comma separated files identified by full path or URL. If a matching track is found for the specifed URL/path it will be deleted. |
| genome | <version> | Specify a genome version (e.g., H_sapiens_Mar_2006). Any genome version or synonym that's accepted by IGB is accepted here. |
| goto | <region> | Go to a region of a chromosome (e.g., "chr1:40000-60000"). Any format that's accepted by IGB is accepted here. |
| hidetrack | <file or URL> | Hide the specified track. Accepts one or more comma separated files identified by full path or URL. |
| homescreen | Return to the homescreen. | |
| load | <file or URL> | Load the specified file (identified by full path) or URL into IGB. The data set will appear in the user's Data Management table upon completion. |
| loadfromserver | ||
| loadmode | <NO_LOAD | REGION_IN_VIEW | CHROMOSOME | GENOME> <file or URL> | Change the load mode for the specified data set or file, identified by full path. |
| refresh | This is equivalent to clicking the Load Data button in IGB. This triggers loading of data from the active data sets available in IGB, as specified in the load command. | |
| select | <geneids> | Selects the given gene IDs, which are passed in as a comma-separated list. |
| selectfeature | ||
| showtrack | <file or URL> | Unhide the specified track. Accepts one or more comma separated files identified by full path or URL. |
| sidetrack | ||
| sleep | <milliseconds> | Sleep the application for x milliseconds. |
| snapshot | <filename> | Export the entire frame an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. |
| snapshotmainView | <filename> | Export the main view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. |
| snapshotmainViewWithLabels | <filename> | Export the main view with labels an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. |
| snapshotslicedViewWithLabels | <filename> | Export the sliced view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. |
| snapshotwholeFrame | <filename> | Export the entire frame to an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. |
| unload | <file or URL> | If a matching track is found for the specified URL/path it will be deleted. Accepts one or more comma separated files identified by full path or URL. |
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