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General Function Checklist

  • Loading Default Tracks
    • Open a species from the home page of IGB.  The examples below are using Arabidopsis Thaliana.
    • Ensure that x and y zoomers are completely zoomed out.
    • Ensure that the tracks consume all of the available vertical space

  • Zoom,Drag, and Selection Operations
  • Zoom in by click and dragging across the coordinates.  Note that the screenshot is missing the mouse cursor.  The blue highlighted area represents the area created by dragging the cursor.

  • Adjust the zoom such that multiple gene models are in view

  • Double click on the barb wire region of a gene model.  The view should zoom to fit the selected gene model.

  • Zoom back out to view multiple gene models
  • Right click on a different gene model.
  • Validate that the menu looks as follows

  • Select "Zoom to Selected"
  • The view should zoom to fit the selected gene model
  • Zoom slightly out in both the x and y direction.
  • Select the hand "Grab Tool".

  • Click and drag anywhere in the track view.
  • Validate that the panel scrolls in the direction of the cursor.
  • Select the "Selection Tool"

  • Go to a group of gene models that are stacked

  • Click and drag across the gene models.
  • Validate that all of the gene models are selected.

 

  • Track Style Preferences
  • Right click on the white space within a track
  • Select the "Customize" option

  • This action should open the Track Preferences tab

  • Change the Track Name and select apply.

  • Validate that the track names were updated.

  • Change the foreground, background, and track label colors.

  • Validate the color changes

  • Change the track label font size

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  • Validate that the font increased appropriately.

 

  • Uncheck the show arrow option

  • Validate that the barb wire disappears from the intron sections of gene models

  • Select the "+/-" option to combine the plus and minus strands.

  • Validate that the two strands are one.

  • Select "Color" option under "Show Strand"

  • Validate that the gene models update to the colors indicated

  • Select "Restore to Default" option

  • Validate that all settings changed in this section (Track Style Preferences) are restored to their original values.

 

  • Adding and Removing Tracks
  • Right click on the white space surrounding the gene models
  • Validate that the context menu looks as follows

  • Select "Delete Track".  The track should disappear.

  • Add the track back in the Data Access tab.

  • The track will reappear with no data loaded.  Select the Load Data button to reload the data.

 

 

 

 

 

 

 

 

 

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