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File Formats
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Title:
File Formats
Author:
Nowlan Freese
Mar 26, 2015
Last Changed by:
Paige Kulzer
Apr 24, 2024
Tiny Link:
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https://wiki.bioviz.org/confluence/x/NAAN
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IGB User's Guide (2)
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I can't see my data
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Reference sequence
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Recent Changes
Time
Editor
Apr 24, 2024 14:05
Paige Kulzer
View Changes
Updated USeq documentation to confirm it is only available in IGB 9.1.8 and earlier.
Mar 27, 2024 12:39
Paige Kulzer
View Changes
Added row to table with information about the CRAM file format; fixed several broken links throughout the table
Dec 21, 2015 14:01
Ann Loraine
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Dec 21, 2015 14:00
Ann Loraine
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Dec 21, 2015 14:00
Ann Loraine
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Outgoing Links
External Links (24)
www.biostat.jhsph.edu/~hji/cisgenome/
www.sanger.ac.uk/Software/formats/GFF
https://bitbucket.org/lorainelab/affyprobesetsforigb
useq.sourceforge.net
samtools.sourceforge.net
www.biodas.org/documents/spec.html
https://wiki.bioviz.org/confluence/display/igbman/About+ann…
https://github.com/samtools/hts-specs
genome.ucsc.edu/goldenPath/help/customTrack.html#PSL
genome.ucsc.edu/FAQ/FAQformat#format1
www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml
samtools.sourceforge.net/tabix.shtml
genome.ucsc.edu/FAQ/FAQblat.html
genome.ucsc.edu/goldenPath/help/bigBed.html
genome.ucsc.edu/FAQ/FAQformat.html#format7
biodas.org/documents/das2/das2_protocol.html
genes.cs.wustl.edu/GTF2.html
genome.ucsc.edu/goldenPath/help/wiggle.html
https://wiki.bioviz.org/confluence/pages/viewpage.action?pa…
genome.ucsc.edu/goldenPath/help/customTrack.html#GTF
song.sourceforge.net/gff3-jan04.shtml
genome.ucsc.edu/goldenPath/help/bigWig.html
www.biostat.jhsph.edu/~hji/
www.biodas.org
IGB User's Guide (2)
Page:
Sharing data for a custom genome not already part of IGB QuickLoad
Page:
Visualizing probe sets
Overview
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{"serverDuration": 81, "requestCorrelationId": "1264e458d1219039"}