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- Load a bed file, a bam file, a bedgraph file, and some sequence data to ensure basic file parsing from the data providers is working as expected. (Load these directly from the Data Access Tree, not from the urls). For an example of each file type, go the the Arabidopsis thaliana genome. Under RNA-Seq / Pollen there are three folders. The Reads folder has bam files. The Graph folder has bedgraph files. The Junctions folder has bed files. Select one file from each folder, zoom in to show only several thousand bases, and Load Data. Most RNA-Seq experiments have a similar structure, are several examples in RNA-Seq and IGB-Quickload. Use the "Load Sequence" button to load sequence and zoom in to make sure you can see individual letter (A, C, T, G) under the coordinate axis.
- Bed File
- Bam File
- Bedgraph File
- Load Sequence
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