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- Load a bed file, a bam file, a bedgraph file, and some sequence data to ensure basic file parsing from the data providers is working as expected. Important: Load these by selecting the checkboxes in the Data Access folder hierarchy, not from URLs displayed in a Web browser. To get examples of each file type, go the the Arabidopsis thaliana June 2009 genome. Under RNA-Seq there are several folders labeled by experiment code and with a human-friendly name. Within those folders, there are folders labeled Reads, Graph, and Junctions. The Reads folder has bam files. The Graph folder has bedgraph files. The Junctions folder has bed files. Select one file from each folder, zoom in to show only several thousand bases, and click Load Data button at the top right of the IGB window. Click the Load Sequence button to load sequence and zoom in to make sure you can see individual letter (A, C, T, G) under the coordinate axis.
- Bed File
- Bam File
- Bedgraph File
- Load Sequence
- Load a few tracks from the UCSC DAS data source. Note: The UCSC DAS data source is not activated by default - you need to activate it in the Data Sources tab of the Preference window. Once this data source is active, it should be visible on Human/Mouse species.
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