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- The App Repositories table matches the image below (both servers should be enabled).
- Mac
- Windows
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- Click the Add... button.
- Name: MergeAnnot
- URL: https://bitbucket.org/lorainelab/merge-annotation-operator/downloads/ (This URL contains an App jar file and OBR index file which makes this a valid App repository)
- Click Submit.
- The MergeAnnot app repository has been added to the App Repositories table with the Name and URL displayed exactly as you entered them.
- Mac
- Windows
- Linux
Close Preferences. Select the Plug-ins tab at the bottom of IGB.
- There is a Launch App Manager button.
- Mac
- Windows
- Linux
Click Launch App Manager.
- The IGB App Manager opens and contains apps similar to those shown below.
- Note: Before selecting any of the plugins at the left, the area at the right is blank. The letter/color for any plugins that are present in both the default set and the test repository will change. By default it is a B for BioViz. If you name the test repository "Test" then they all change to a "T". (UPDATE IMAGE)
- Mac
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Select Manage Repositories…
- The App Repositories tab in Preferences opens.
- Mac
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- Linux
- Select the checked checkbox in the Enabled column to disable the MergeAnnot app repository.
- Ensure the BioViz app repository is enabled, and then click Done.
- Select the Plug-ins tab at the bottom of IGB and launch the IGB App Manager again.
- The available BioViz apps are listed and the color of the "Merge Annotation Track Operator" app's icon changes to indicate that the MergeAnnot app repository isn't being used (UPDATE IMAGE):
- Mac
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Install the Geometric Mean app by selecting it from the list and clicking Install.
- The Install button toggled to read Uninstall and there is a green dot next to the Geometric Mean app to indicate an installed status.
- Mac
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- Close the IGB App Manager.
- View the Log by selecting Help > Show Log.
- A logging statement confirms that the Geometric Mean app was installed correctly.
- Mac
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- Launch the IGB App Manager again.
- Uninstall the Geometric Mean app by clicking the Uninstall button.
- The Uninstall button now reads Install and the green dot next to the Geometric Mean app is now gone.
- Mac
- Windows
- Linux
Close the IGB App Manager and open the Log.
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