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1. Show as default color - Soft-clipping shows as a default gray.
2. Show as custom color... - Using a color picker, soft-clipping shows as selected color.
3. Show as bases - Soft-clipping shows as Residue Colors.
4. Hide soft-clipping - Soft-clipping is hidden.

Note: When using the hide soft-clipping option, a line showing the full length of the read including the soft-clipped portion will appear. To completely hide the soft-clipping portion of the read, use the Show as Custom Color soft-clip option, and select the same color as the background for the track.

Track Operations and Soft-clipping

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