Color by...

1. Open the A_thaliana_Jun_2009 genome
2. Navigate to Chr1:6,709,263-6,716,866
3. Check that the Araport annotation is loaded
4. Right-click on the Araport track name and select Color by...
   1. In the Color By window, use the dropdown to select Length
   2. Click on the Edit button next to heatmap
      1. In the Configure Heatmap window, click on Set Range
         1. In the Set Range window, set the Min to 200 and the Max to 2000
         2. Click OK
      2. Double-click the right-most arrow
         1. In the Select new color window, select red
         2. Click OK
      3. Double-click the arrow to the left of the right-most arrow
         1. In the Select new color window, select red
         2. Click OK
      4. Click OK
   3. Click OK

• Check that the track matches the image above.

• Mac
• Linux
• Windows

1. Right-click on the Araport track name and select Color by...
   1. In the Color By window, use the dropdown to select None.
   2. Click OK

• Check that the track color is reset back to its original color (should be black).

• Mac
• Linux
• Windows

Filter...

1. Open the A_thaliana_Jun_2009 genome
2. Navigate to Chr1:6,724,008-6,735,355
3. Check that the Araport annotation is loaded
4. Right-click on the Araport track name and select Filter...
   1. In the Add/Remove/Edit Filters window, click Add
      1. In the Add filter window, use the dropdown to select Reads with no gaps
      2. Click OK
   2. Click OK

• Check that the track matches the image above.

• Mac
• Linux
• Windows

1. Right-click on the Araport track name and select Filter...
   1. In the Add/Remove/Edit Filters window, select Reads with no gaps
   2. Click Remove
   3. Click OK

• Check that the filter is removed and the missing annotations are visible.

• Mac
• Linux
• Windows