View Modes

under construction

IGB will have the ability to display features using different methods called View Modes.
Each View Mode will only be appropriate to certain feature types. (@ indicates an existing mode)

Annotations/Alignments

• MaxExpanded @
• Collapsed @
• ScrollExpanded - like MaxExpanded, but with a vertical scroll, and no max stack depth
• Depth @
• Tabular - show the data in a table like the Selection Info tab (rows/columns reversed)
• Gaps removed @ (this is in the Sliced View)

Alignments

• Mismatch @
• Mismatch Pileup @

Graphs

• Bar @
• Line @
• Dot @
• Min/Max/Avg @
• Heat Map @
• StairStep @
• Histogram
• these can be combined with the graph collapse/expand option

Operations

View Modes can be the result of an operation or series of operations on the SeqSymmetry data
e.g the not annotation operation, or the log graph operation. The view mode is on the output
SeqSymmetry of the operation.

Varying

View Modes can be varying, depending on the view state, for example for a zoomed out annotation,
the depth view mode is shown, but when zoomed in, the MaxExpanded annotation view mode is shown.

Notes

• some of the view modes can be options, like collapsed/expanded graphs, or
  Gaps Removed for annotations, or histogram bin width for graphs.
• The different View Modes can have parameters, like the user options in the track preferences.
  These same options can be instead linked to the data.