IGB User's Guide
Page tree

Versions Compared

Old Version 9

changes.mady.by.user Unknown User (jnicol1)

Saved on

compared with

New Version 10

changes.mady.by.user Unknown User (hvora1)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

The script file has a simple, space-delimited syntax.

...

Commands

"genome <version>"

  • Specify a genome version (e.g., H_sapiens_Mar_2006). Any genome version that's accepted by IGB is accepted here.

...

  • Sleep the application for x milliseconds.

Example script

Panel

#select genome

genome A_thaliana_Jun_2009

#go to chromosome at region

goto chr4:18,040,000 - 18,045,056

#load the file

load http://bioviz.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bamImage Removed

#set load mode to region in view

loadmode VISIBLE REGION_IN_VIEW http://bioviz.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bamImage Removed

#refresh to view data

refresh