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Comment: The URL in the code block in the Examples section was outdated, so that's now been updated.

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You can control IGB from scripts, which are text files containing simple commands for navigation, loading data, and making snapshots.

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  • Open a script file using File > Open. Script files should end with .igb.
  • Click an IGB script link. See: Controlling IGB using IGB Links
  • Drag and drop a script file into an open IGB windowjp

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  • window.

Syntax

The script file has a simple, space-delimited syntax. Each command should occupy a separate line.

Commands

Bring IGB to front

Code Block
bringToFront

Bring the IGB window to the front of the user's desktop.

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Open a genome version

Code Block
genome <version>

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Go to a region of a chromosome (e.g., "chr1:40000-60000" or "chr1:40,000-60,000"). Commas are optional. Any region format accepted by the IGB quick search text entry (top left corner) is acceptable.

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Hide a track

Code Block
hidetrack <file or URL>

Hide the track. Accepts one or more comma separated files identified by full path or URL.

Add a new data set to IGB's list of active data sets

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Code Block
# select genome
genome A_thaliana_Jun_2009
# go to a region in chr4
# commas are optional
goto chr4:8,860,484-8,872,096
# load a file
load http://igbquickload.org/quickloadrnaseq/A_thaliana_Jun_2009/cold_stress/cold_control.smSRP029896/ColdControl.bam
# load the data
refresh

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https://gist.github.com/Hillrunner2008/25976458488b65a3a25b

 

 

 

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