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• The ProtAnnot window title contains the absolute sequence coordinates, strand direction, contig name, and the genome version.

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1. Select the ProtAnnot menu.
2. Select Run InterProScan menu item.

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• Text is wrapping correctly for the information icon.
  

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• The information link directs to the appropriate "About InterPro" page.
  

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1. Provide an email address in the Email field.
   1. An email address is required for running InterProScan. Otherwise, InterProScan may not return jobs. 
2. Click Run.
3. Select the InterProScan tab.

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• All job statuses are completed with a status of Finished.

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• Clicking on the result cell opens the result xml on the InterProScan website.

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1. Select the Properties tab.
2. In the display window, select a gene model to open the Properties tab.

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• Exons have the correct protein sequences.

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1. In the display window, select a protein annotation to open the Properties tab.
2. The following properties should be present and correct:

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• Application and library name

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• Functional URL link

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• Start, end, and length coordinates

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1. Run the InterProScan again by selecting Run InterProScan under the InterProScan tab.
2. Once the jobs are running, select Cancel All Jobs under the InterProScan tab.

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• Job statuses are Cancelled, and there are no exceptions in the Log.

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1. Select ProtAnnot in the top left of the ProtAnnot window, and then choose Save Image...
2. Save the image to your machine, then open the file.

• The image is viewable and saved appropriately.

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