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  • Loading data looks like this (stack height set at 10, reads may be organized randomly):
  •  mac
  •  linux
  •  windows



  • The Configure soft-clip submenu of the bam track right-click menu has Show as default color selected.
  •  mac
  •  linux
  •  windows



  1. Right-click on the bam track and select: Configure soft-clip -> Show as custom color.
  2. Choose a red color from the color picker.

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  • Your IGB looks like the above image.
  •  mac
  •  linux
  •  windows



Right-click on the bam track and select: Configure soft-clip -> Show as bases.

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  • Your IGB looks like the above image.
  •  mac
  •  linux
  •  windows



Right-click on the bam track and select: Configure soft-clip -> Hide softclipping.

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  • Your IGB looks like the above image.
  •  mac
  •  linux
  •  windows

 

To test track operations are working correctly for soft-clipped data, right-click on the bam track and select the following:

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  • Your IGB looks like the above image.
  •  mac
  •  linux
  •  windows