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General Function Checklist

Check the caching system to ensure that it is functioning as expected

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Start by pressing the Clear All button from the Cache tab in Preferences.

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  • There are no entries seen in the Cache tab after pressing Clear All (Current Cache Size should be

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  • 0 MB).

  •  mac
  •  linux
  •  windows


Close Preferences. Select the

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A_thaliana_Jun_2009 genome and click Load Sequence

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.

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  • The following prompt appears:  

  •  mac
  •  

...

  • linux
  •  windows


Select Yes to cache the sequence.

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  • After a moment (several minutes), the Cache tab in Preferences

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  • contains the following entries:

 

  •  

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  •  Verify that the mac
  •  linux
  •  windows
  • The Current Cache Size is

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  • 32 MB.

  •  mac
  •  linux
  •  windows


Adjust the Max Cache Size to

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15 MB, then click

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Apply.

     Verify that the
  • The following popup appears on the screen:

  •  mac
  •  linux
  •  windows


Now remove the 2bit file (

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29 MB) from the cache by highlighting the file and clicking Remove.

     Verify that the
  • The Current Cache Size has changed to
  • 2mb
  • 2 MB.

  •  mac
  •  linux
  •  windows


Adjust the Max Cache Size to 

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15 MB, then click

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Apply.

  •  Observe no error.

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  • Select the genome Arabidopsis thaliana and No errors pop up, and there are no warnings or errors in the Log.
  •  mac
  •  linux
  •  windows


Select the A_thaliana_Jun_2009 genome and press the Load Sequence

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button (again) and select

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Yes (again).

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  • The following popup appears on the screen:

Image Modified

  •  mac
  •  

...

  • linux
  •  windows


Select Reset Cache Preferences

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 and hit Refresh to update the Max Cache Size value

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.

  • Cache preferences have been reset.
  •  mac
  •  linux
  •  windows