IGB User's Guide
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Table of Contents

Introduction

This page documents the various endpoints used to convert IGB Quickloads to a UCSC track hub.

Converter UI

URL - https://translate.bioviz.org/

...

    • Url - https://translate.bioviz.org/api/generateUcscSynonyms

    • Logic

      1. Fetch the list of UCSC genomes from:
        https://api.genome.ucsc.edu/list/ucscGenomes
      2. Check if these genomes exist in IGB’s source code synonyms.txt file (path: core/synonym-lookup/src/main/resources/synonyms.txt).
      3. If a UCSC genome is found in synonyms.txt, add the IGB genome name (first column in synonyms.txt) and the UCSC genome name to a new the synonyms.txt in the hub_facade repository (path: igb_trackhub/api/synonyms.txt).