Version

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control

The IGB project uses git for version control. Previously, we used svn (subversion) and cvs. We migrated from an svn repository on SourceForge to a git repository on Bitbucket in 2014.

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• genometry - genomic data models used in IGB and the DAS server code
• igb - the core IGB application
• plugins - functions added via plug-in interface, plug-ins are also called bundles (uses OSGi)
• common - common classes used by the other projects

QuickLoad

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testing

The following git repository contains broken QuickLoad sites that are helpful for testing within IGB.

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IGB depends on the Genoviz Software Development Kit (Genoviz SDK) which is version-controlled in a separate repository at https://bitbucket.org/lorainelab/genoviz-sdk. When you build IGB, the compilation tool we use (maven) will obtain the latest copy of the genoviz compiled code (a "jar" file) and install it locally.

Release Tags

When creating a release, we sometimes create a tag indicating at what point the release was built.

GenoPub project

For information about the GenoPub project, please contact David Nix, Huntsman Cancer Institute.