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package mypackage;
import com.affymetrix.genometryImpl.util.FloatTransformer;
public class MyTransformer implements FloatTransformer {
final String paramPrompt;
final String name;
public MyTransformer() {
super();
paramPrompt = null;
name = "MyTransformer";
}
public String getParamPrompt() { return null; }
public String getName() {
return name;
}
public String getDisplay() {
return name;
}
public float transform(float x) {
return x; // boring, put your own math function here, return 1.0/x; or return 3*x*x*x - 2*x*x +8*x - 6;
}
public float inverseTransform(float x) {
return 0.0f;
}
public boolean isInvertible() { return false; }
public boolean setParameter(String s) {
return true;
}
}
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- Now, compile and jar these files into MyTransformer.jar (the jar command has a -m option for the manifest file).
- At this point, you want to put your jar into a web server using OBR (see above).
- To add the plugin to a web server without OBR, in the plugins directory, from the command line run
java -cp IGB_HOME/igb_server/lib/bindex.jar -jar bindex.jar -n IGB -q -r repository.xml .- where IGB_HOME is your IGB directory.
To create plug-ins using eclipse - a Quick-Start Guide
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