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1. Now, compile and jar these files into MyTransformer.jar (the jar command has a -m option for the manifest file).
2. At this point, you want to put your jar into a web server using OBR (see above).
   • To add the plugin to a web server without OBR, in the plugins directory, from the command line run
   • java -cp IGB_HOME/igb_server/lib/bindex.jar -jar bindex.jar -n IGB -q -r repository.xml .
   • where IGB_HOME is your checked-out copy of the genoviz-trunk repository from Sourceforge.net. 
3. this will create a repository.xml file listing all the bundles and their requirements.
4. make sure the repository.xml file and the bundles directory are accessible to the web server.
5. in IGB, open the File>Preferences page, Plugin Repositories tab
6. click the add button at the bottom
7. enter the web server URL for the directory that has the repositories. can we delete this?xml file that you created - you can use whatever you want for the name.
8. close the Preferences page.
9. Open the Plugins tab
10. you should see your bundle in the table, click on the install checkbox.
11. Once you have installed your bundle, select a graph track on the main view, and open the Graph Adjuster tab. Now if you click on the Transformation drop down, you will see MyTransformer in the list. Select it and click the Go button, and you will see a new track using your bundle.

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