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1. Now, compile and jar these files into MyTransformer.jar (the jar command has a -m option for the manifest file).
2. At this point, you want to put your jar into a web server using OBR (see above).
   • To add the plugin to a web server without OBR, in the plugins directory, from the command line run
   • java -cp IGB_HOME/igb_server/lib/bindex.jar -jar bindex.jar -n IGB -q -r repository.xml .
   • where IGB_HOME is your checked-out copy of the genoviz-trunk repository from Sourceforge.net. 
3. ... can we delete this?
4. Once you have installed your bundle, select a graph track on the main view, and open the Graph Adjuster tab. Now if you click on the Transformation drop down, you will see MyTransformer in the list. Select it and click the Go button, and you will see a new track using your bundle.

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