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For genomes harvested from UCSC, this foundation gene annotations data typically are from the the UCSC refGene table. If a genome does not have a refGene table, we instead use ensGene or whatever other genes data set looks the most complete and the most useful.
Understand IGBQuickLoad naming conventions
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IGBQuickLoad file names should include the genome version and the UCSC table name. The title in the annots.xml file should match the track name. |
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Add quickload_src to your PATH as it contains a python script you'll use to created BED detail files from ordinary BED files. Edit the .bash_profile file as in above:
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export PATH=.:$HOME/quickload_src:$HOME/bin:$PATH |
Pick a genome to update and change into the genome version directory
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