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The following instructions assume you are not going to make a new genome version directory and that all you need to do is update a refGene , all_mrna and all_est files.data set.
For many genomes supported by UCSC, the refGene data collection from UCSC represent the canonical gene model annotations for that genome. These should therefore be the annotations that IGB automatically loads when a user visits a genome version for that species.
IGB QuickLoad is configured so that a set of foundation gene annotations (gene models) load the canonical gene models annotations are loaded into IGB as soon as the user selects the corresponding genome version.
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export PATH=.:$HOME/bin:$PATH |
Step-by-step guide to updating UCSC RefGene data
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set in IGB QuickLoad
Get the QuickLoad data repo
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