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- com.affymetrix.genometryImpl.operator.transform.FloatTransformer - transforms a graph track from the GraphAdjuster tab
- com.affymetrix.genometryImpl.operator.graph.GraphOperator - operates on a selection of graph tracks from the GraphAdjuster tab
- com.affymetrix.genometryImpl.operator.annotation.AnnotationOperator - operates on a selection of annotation tracks from the SeqMap popup
- com.affymetrix.genometryImpl.parsers.FileTypeHandler - process a file type (by the file extension)
- com.affymetrix.igb.shared.TrackClickListener - called when the user clicks on the label portion of a track
- com.affymetrix.igb.shared.GlyphProcessor - called when IGB creates a glyph
- com.affymetrix.igb.shared.ExtendedMapViewGlyphFactoryI - a new way to display a track
- com.affymetrix.igb.search.mode.ISearchMode - a new search method option on the Search View tab
- com.affymetrix.igb.osgi.serviceIGBTabPanel service.IGBTabPanel - a tab in the JTabbedPane at the bottom and sides of IGB
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