| Commands | Arguments | Description | ExampleExamples | |||||
|---|---|---|---|---|---|---|---|---|
bringToFront | none | This command allows a user to bring the IGB window to the forefront of the screen, in front of all open windows. It accepts no arguments. | bringToFront | deleteTrack | <file or URL> | This command accepts one or more comma separated files identified by full path or URL. If a matching track is found for the specifed URL/path it will be deleted. | deleteTrack http://igbquickload.org/A_thaliana_Jun_2009/TAIR10_mRNA.bed.gzMake IGB the top window on the Desktop. c | bringToFront |
| genome | <version> | Specify Load a genome version. Accepts IGB-friendly genome version names (e.g., H_sapiens_MarFeb_20062014) . Any genome version or synonym that's accepted by IGB is accepted here.and synonyms. | genome H_sapiens_Mar_2006 | |||||
| goto | <region> | Go to a region of a chromosome (e. g., "chr1:40000-60000"). Any format that's accepted by IGB is accepted here. Commas are optional. | goto chr1:13,640,211-13,643,760 goto chr1:13640211-13643760
| |||||
| hidetrack | <file or URL> | Hide the specified track. Accepts one or more comma separated files identified by full path or URL. | hidetrack http://igbquickload.org/H_sapiens_Dec_2013/H_sapiens_Dec_2013_all_mrna.psl.gz | |||||
| homescreen | none | Return to the homescreenIGB Start Screen. | homescreen | |||||
| load | <file or URL> | Load the specified file (identified by full path) or URL into IGB. The data set will appear in the user's Data Management table upon completion. | load http://igbquickload.org/D_melanogaster_Jul_2014/D_melanogaster_Jul_2014.bed.gz | |||||
| loadfromserver | <serverURL datasourceURL> | This command allows a Load the data set to be loaded from a configured "Data Source Provider" (e.g. a Quickload site)from ed from an IGB Data Source. This command requires a server URL and a datasource URL. | loadfromserver http://igbquickload.org/ http://igbquickload.org/A_thaliana_Jun_2009/TAIR10_TE.bed.gz | |||||
| loadmode | <NO_LOAD | REGION_IN_VIEW | CHROMOSOME | GENOME> <file or URL> | Change the load mode for the specified a data set or file, identified by full path. | loadmode GENOME http://igbquickload.org/M_musculus_Dec_2011/M_musculus_Dec_2011_refGene.bed.gz | |||||
| refresh | none | This is equivalent to clicking the Load Data button in IGB. This triggers loading of data from the active data sets available in IGB, as specified in the load command. | refresh | |||||
| select | <geneids> | Selects the given gene IDs, which are passed in as a comma-separated list. | select AT1G36280.2,AT1G36240.1,AT1G36340.1 | |||||
| selectfeature | <geneids> | Selects the given gene IDs, which are passed in as a comma-separated list. | selectfeature | |||||
| showtrack | <file or URL> | Unhide the specified track. Accepts one or more comma separated files identified by full path or URL. | showtrack http://igbquickload.org/O_sativa_japonica_Oct_2011/O_sativa_japonica_Oct_2011.bed.gz | |||||
| sleep | <milliseconds> | Sleep the application for x milliseconds. | sleep 6000 | |||||
| snapshot | <filename> | Export Note: specify the full path to file. | Create an image showing the entire IGB window. the entire frame an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshot alternativesplicing1.png | ||||
| snapshotmainView | <filename> | Export the main view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. Same as snapshot but only makes an image showing the main IGB data display. | snapshotmainView testimage.jpeg | |||||
| snapshotmainViewWithLabels | <filename> | Export the main view with labels an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotmainViewWithLabels imageexport1.svg | |||||
| snapshotslicedViewWithLabels | <filename> | Export the sliced view an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotslicedViewWithLabels April_1_2015.png | |||||
| snapshotwholeFrame | <filename> | Export the entire frame to an image file. The filename extension determines the format. Supported formats are .png, .jpeg, and .svg. | snapshotwholeFrame GeneAT1G36280wholeframe.jpeg | |||||
| unload | <file or URL> | If a matching track is found for the specified URL/path it will be deleted. Accepts one or more comma separated files identified by full path or URL. | unload http://igbquickload.org/A_thaliana_Jun_2009/cold_stress/cold_control.sm.bam |
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