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- single-coordinate feature: splice sites
- single-span feature, with strand: an exon
- single-span feature, no strand: a restriction site
- multi-span feature, with strand: a gene model
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Graphs
Graphs are numeric data associated with regions or single-base positions in a chromosome.
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Sequences
Sequences are DNA residues from a chromosomes or contigs that together make an assembly. Sequences can be fully or partially loaded from local files, Quickload sites, or Distributed Annotation Servers. You can view sequence data in the Coordinates track or by opening the Sequence Viewer.
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Alignments
Alignments represent how sequences obtained from an experiment (such as reads from an RNA-Seq experiment) align onto a reference sequence. At low zoom they look like annotations, with marks representing mismatches, insertions, or deletions. At higher zoom, the aligned sequence bases become visible.
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Probe set alignments
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These data are Affymetrix specific.
