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General Function Checklist

All steps successfully completed in:

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•  linux
•  windows

Open a file from BioViz Connect 

Note: If you do not have a CyVerse account, sign up for a free account at https://user.cyverse.org/register

Note: BioViz Connect should support the following browsers: Chrome, Firefox, Edge. BioViz Connect does not support Safari.

• Make sure that IGB is running.

In a web browser:

1. Go to https://www.bioviz.org/connect.html
2. Log in with your Cyverse account.
3. Navigate to Community > BioViz > rnaseq > A_thaliana_Jun_2009 > SRP220157 > reads
4. Find SRR10060893.bam and click the View in IGB button.

In IGB:

• The A_thaliana_Jun_2009 genome should automatically open in IGB.

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•  The SRR10060893 - Watered control file should be added as a new track.

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• The SRR10060893 - Watered control foreground (FG) color should be blue (check the Data Management Table).

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1. Navigate to Chr1:2,257,393-2,260,187
2. Click Load Data

• The data should load for SRR10060893 - Watered control.

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• There should be no warnings or errors in the IGB Log.

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•  windows