Overview

This feature provides a reusable, paginated StyledJTable UI designed to work with external data providers. Developers can plug in their own data sources by implementing a simple interface and configuring the desired table columns.

Functional Requirements

• To have a similar UI for all the external data providers that are integrated as an IGB App.
• Make the UI extendable for any type of provider with custom table columns, search functionality, and load action.

Technical Implementation

This feature is implemented in the igb-services-api module. Classes that are part of this feature:

• GenomeDynamicSearchTable - a class that extends StyledJTable and defines how the columns should be displayed, especially the default columns, load, and info.

• GenomeDynamicSearchTableModel - Custom AbstractTableModel that uses the data provider interface instance to dynamically populate the table and perform actions.

• ExternalGenomeDataProvider - An interface that has all the methods that need to be implemented by any class that wants to extend this UI.
• ExternalGenomeData - A general-purpose structure used to represent each row of the table. This is passed to/from the data provider.
• GenomeDynamicSearchTableGUI - JPanel class that has all the UI components, including the custom JTable. It has below features:
• Dynamic, paginated table UI with grouped page navigation (< 1 2 3 >)
• Optional search functionality to filter table data based on user input
• Column sorting support — click any column header to sort data
• Results summary label (e.g., 1–10 of 250 results) for clarity
• Has the GenomeDynamicSearchTable, which includes customizable columns and data using the ExternalGenomeDataProvider interface, and also includes built-in "Load" button and "Info" icon actions for each row
• Responsive column sizing based on content and header length

How to Use/Extend in a Plugin App

Below are the steps that can be used to create a Plugin app and use this extendable UI to add an external data provider as an IGB app. You can use the ucsc-genark-data-provider plugin app as a reference at any point.

• Create a new module using this documentation: https://wiki.bioviz.org/confluence/display/igbdevelopers/Hello+World+IGB+App
• Include these dependencies in the pom to extend IgbTabPanel to add the app as a tab in IGB. Make sure the IGB_VERSION is 10.2.0 or higher.

<dependency>
	<groupId>org.lorainelab.igb</groupId>
	<artifactId>igbSwingExt</artifactId>
	<version>${IGB_VERSION}</version>
</dependency>

<dependency>
	<groupId>org.lorainelab.igb</groupId>
	<artifactId>igb-services</artifactId>
	<version>${IGB_VERSION}</version>
</dependency>

• Create a class, CustomDataProvider, and implement the ExternalGenomeDataProvider interfaceto provide implementation for all the methods.
• Now, create a class to extend the IgbTabPanel like below to add the app as a tab:

package org.lorainelab.igb.custom.data.provider;

import org.lorainelab.igb.services.dynamic.search.GenomeDynamicSearchTableGUI;
import org.lorainelab.igb.services.window.tabs.IgbTabPanel;
import org.lorainelab.igb.services.window.tabs.IgbTabPanelI;
import org.osgi.service.component.annotations.Component;
import java.awt.BorderLayout;

@Component(service = {IgbTabPanelI.class}, immediate = true)
public class CustomDataProviderTabPanel extends IgbTabPanel {

    private final CustomDataProvider customDataProvider = new CustomDataProvider();

    private final GenomeDynamicSearchTableGUI dynamicSearchTableGUI = new GenomeDynamicSearchTableGUI(customDataProvider);

    public CustomDataProviderTabPanel() {
        super("Custom Data Provider", "Custom Data Provider", null, false, 8);
        init();
    }

    private void init() {
        this.setLayout(new BorderLayout());
        this.add(dynamicSearchTableGUI);
        this.pack();
    }

}