...
Ensure that loading data looks like this (stack height set at 10, reads may be organized randomly):
- mac
- linux
- windows
Validate that the 'Configure soft-clip' submenu of the bam track right-click menu has 'Show as default color' selected.
- mac
- linux
- windows
Right-click on the bam track and select:
Configure soft-clip -> Show as custom color
...
Ensure your view is as below, with the color you chose correctly applied:
- mac
- linux
- windows
Right-click on the bam track and select:
Configure soft-clip -> Show as bases
Ensure your view is as below:
- mac
- linux
- windows
Right-click on the bam track and select:
Configure soft-clip -> Hide softclipping
Ensure your view is as below:
- mac
- linux
- windows
To test track operations are working correctly for soft-clipped data, right-click on the bam track and select:
...
Ensure your view is as below:
- mac
- linux
- windows
