Page History

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1. • Add a Data Provider to IGB using the following URL: http://igbquickload.org/smokeTestingQuickload/
     
     •  The added Quickload site is available for the Homo sapien genome under the Available Data pane.
       
       
       
     • Verify that all files in the Quickload site are loading into IGB (Data set names may differ from below - that's OK)
       
       • Bam
         •  Bam_HomoSapien.bam 
           go to region: chr1:1,695,935-1,696,076
           click Load Sequence to load sequence data and create track (gray), click Load Data to load data into it
         •  
           
       • Bed
         •  Bed_HomoSapien.bed
         •  Bed_HomoSapien.bed.gz
           region: chr1:1,699,059-1,912,174
           
         •  Ensure soft-clipping can be hidden using the right-click menu, as shown below:
           
           
           Image Modified
       • BedGraph
         •  BedGraph_HomoSapien.bedgraph
         •  BedGraph_HomoSapien.bedgraph.gz
           chr1:386,893-7,895,983
           
       • BigBed
         •  BigBed_HomoSapien.bigbed
           chr1:1,735,393-2,060,653
           
       • BigWig
         •  BigWig_HomoSapien,bigwig
           chr1:1,735,393-2,060,653
           
       • GFF3
         •  GFF3_HomoSapien.gff3
         •  GFF3_HomoSapien.gff3.gz
           region: chr1:1,735,393-2,060,653
           

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