Page History

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1. • Add a Data Provider to IGB using the following URL: https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/
     
     •  The added Quickload site is available for the Homo sapien genome under the Available Data pane.
       
       
       
     • Verify that all files in the Quickload site are loading into IGB (Data set names may differ from below - that's OK)
       
       • Bam
         •  Bam_HomoSapien.bam 
           go to region: chr1:1,695,935-1,696,076
           click Load Sequence to load sequence data and create track (gray), click Load Data to load data into it
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       • Bam - PacBio with softclipping
       • •  pacBio.bam
           go to regionchr1: chr1:9,971-10,034
           click Load Sequence to load sequence data and create track (gray), click Load Data to load data into it
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       • Bed
         •  Bed_HomoSapien.bed
         •  Bed_HomoSapien.bed.gz
           region: chr1chr1:1,699,059-1,912,174
           
           
           
       • BedGraph
         •  BedGraph_HomoSapien.bedgraph
         •  BedGraph_HomoSapien.bedgraph.gz
           chr1:386,893-7,895,983
           
       • BigBed
         •  BigBed_HomoSapien.bigbed
           chr1:1,735,393-2,060,653
           
       • BigWig
         •  BigWig_HomoSapien,bigwig
           chr1:1,735,393-2,060,653
           
       • GFF3
         •  GFF3_HomoSapien.gff3
         •  GFF3_HomoSapien.gff3.gz
           region: chr1:1,735,393-2,060,653
           

1. • • • GTF
         •  GTF_HomoSapien.gtf
         •  GTF_HomoSapien.gtf.gz
           
           
           
       • NarrowAndBroadPeak
         •  BroadPeak_HomoSapien.broadpeak
         •  BroadPeak_HomoSapien.broadpeak.gz
           chr1:800,118-800,619
           
           
           
         •  NarrowPeak_HomoSapien.narrowpeak
         •  NarrowPeak_HomoSapien.narrowpeak.gz
           chr1:9,361,070-9,361,207
           
           
           chr1:0-12,643,524
           
       • Sam
         •  Sam_HomoSapien_withHeader.sam 
           go to region: chr1:185,695234,935475-185,696234,076
           To get the dark blue blocks you will need to load the sequence.
           The data in this file is identical to the Bam file above (Bam_HomoSapien.bam), it should appear identical to that.620
           Load data and sequence
           Image Added
       • VCF
         •  VCF_HomoSapien.vcf
         •  VCF_HomoSapien.vcf.gz
           chr1:1,234,555-1,234,601
           
       • Wig
         •  Wig_HomoSapien.wig
         •  Wig_HomoSapien.wig.gz
           chr1:37,750,880-38,042,899
           

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