General Function Checklist
Objective: Validate that soft-clipping can be hidden and customized using the right-click menu of a bam track, as shown below:
Download Leaf1.small.aligned.sorted.softClipped.bam and Leaf1.small.aligned.sorted.softClipped.bam.bai
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Open Leaf1.small.aligned.sorted.softClipped.bam and
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go to:
chr1:13,123,770-13,123,840
- Ensure that what you see is as below:
- Validate that the 'Configure soft-clip' submenu of the bam track right-click menu has 'Show as default color' selected
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Right-click on the bam track and select:
Configure soft-clip -> Show as custom color
- Ensure your view is as below, with the color you chose correctly applied. I chose purple, so:
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Right-click on the bam track and select:
Configure soft-clip -> Show as bases
- Ensure your view is as below:
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Right-click on the bam track and select:
Configure soft-clip -> Hide softclipping
- Ensure your view is as below:
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