General Function Checklist
Check IGB file types
- Certain file types created in Galaxy can be opened in IGB by clicking the display in IGB link. Check file types by looking at Galaxy source code.
- Go to https://github.com/galaxyproject/galaxy
- Identify and select the current release branch of Galaxy. For example, 18.05 was the current branch in May 2018.
- Navigate the source code directories. Go to display_applications/igb
- View list of XML files. Each XML file enables IGB to open a file type. For example, bb.xml enables IGB to open a bigbed file hosted on a Galaxy server.
- Check that all file types are listed below.
Open file types
- Go to https://usegalaxy.org
- Select Shared Data > Histories
- Search for user aloraine
- Select History named For Testing IGB to Galaxy Bridge
- The View in IGB option in Galaxy opens in IGB for the following file formats:. Check each of them by opening the file in Galaxy and selecting the View in IGB link.
- BEDBED
- BAMBAM
- BEDGRAPH
- GTF
- WIG
- WIGBIGWIG
- BIGWIGGTF
- BIGBED
Observation: The Galaxy file is opened in - IGB.
For instructions, see IGB User's Guide.
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