IGB Release Documentation
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    • Add a Data Provider to IGB using the following URL: http://igbquickload.org/smokeTestingQuickload/
      •  The added Quickload site is available for the Homo sapien genome under the Available Data pane.


      • Verify that all files in the Quickload site are loading into IGB:
        • Bam
          •  Bam_HomoSapien.bam
            Image Removedbam 
            go to region: chr1:1,695,935-1,696,076
            To get the dark blue blocks you will need to load the sequence.
            Image Added
        • Bed
          •  Bed_HomoSapien.bed
          •  Bed_HomoSapien.bed.gz
            Image Removed
            region: chr1:1,699,059-1,912,174
            Image Added

        • BedGraph
          •  BedGraph_HomoSapien.bedgraph
          •  BedGraph_HomoSapien.bedgraph.gz
            Image Removed
            chr1:386,893-7,895,983
            Image Added
        • BigBed
          •  BigBed_HomoSapien.bigbed
            Image Removedchr1:1,735,393-2,060,653
            Image Added
        • BigWig
          •  BigWig_HomoSapien,bigwig
            Image Removedchr1:1,735,393-2,060,653
            Image Added
        • GFF3
          •  GFF3_HomoSapien.gff3
          •  GFF3_HomoSapien.gff3.gz
        • GTF
          •  GTF_HomoSapien.gtf
          •  GTF_HomoSapien.gtf.gz
            Image Added

        • NarrowAndBroadPeak
          •  BroadPeak_HomoSapien.broadpeak
          •  BroadPeak_HomoSapien.broadpeak.gz
          •  NarrowPeak_HomoSapien.narrowpeak
          •  NarrowPeak_HomoSapien.narrowpeak.gz

          VCF
          •  VCF_HomoSapien_Mutations(SNPs).vcf
          •  VCF_HomoSapien_Mutations(SNPs).vcf.gz
            •  Can you see mutations (SNPs)?
              Image Removed
          •  VCF_HomoSapien_InsertionsAndDeletions.vcf
          • chr1:0-12,643,524
            Image Added
        • VCF
          •  VCF_HomoSapien_InsertionsAndDeletions.vcf.gz
            •  Can you see deletions?
              Image Removed
            •  Can you see insertions?
              Image Removed

            chr1:1,234,555-1,234,601
            Image Added
        • Wig
          •  Wig_HomoSapien.wig
          •  Wig_HomoSapien.wig.gz
            chr1:37,750,880-38,042,899
            Image Added


Sequence appearance

Go to the Arabidopsis genome.  From the RNA-Seq quicklaod (available by default as of 9.0.1), open the file RNA-Seq / Pollen SRP022162 / Reads / Pollen alignments.  (url http://lorainelab-quickload.scidas.org/rnaseq/A_thaliana_Jun_2009/SRP022162/Pollen.bam)

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