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General Function Checklist

ProtAnnot is launched from IGB

•  mac
•  linux
 windows

• • Install the ProtAnnot plugin through the App Manager (Tools>Open App Manager)
    • It may be helpful to watch this How to use ProtAnnot YouTube video if you are unfamiliar with using ProtAnnot.
  • Select and open the genome Arabidopsis
Thaliana
• • thaliana. 
  • Go to the gene Chr1:2,257,247-2,260,234
Please note, to simulate the images in this testing module, select gene model annotations that are adjacent to one another, rather than annotations that are far apart. Selecting annotations that are far apart will cause ProtAnnot to display a view that is significantly more zoomed out compared to the images in this testing module. However, this can be adjusted with the zoom bar feature. 
• • Select the AT1G07350.1 and AT1G07350.2 gene models by shift-clicking both models. Make sure that the full model is selected, and not an individual exon.
  • Select the Tools Menu
  • Select Start ProtAnnot

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CheckpointProtAnnot is launched from IGB

•  mac
•  linux
•  windows

• • Your selected gene model(s) should look as follows when loaded into ProtAnnot; take note of the following key items in red:
    • The window title
    • The ProtAnnot menu
    • The navigation and zoom bar
    • Th selected gene model(s) name
    • The Properties and InterProScan tabs
      

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