Page History

...

1. • Add a Data Provider to IGB using the following URL: https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/
     
     •  The added Quickload site is available for the Homo sapien genome under the Available Data pane.
       
       
       
     • Verify that all files in the Quickload site are loading into IGB (Data set names may differ from below - that's OK)
       
       • Bam
         •  Bam_HomoSapien.bam 
           go to region: chr1:1,695,935-1,696,076
           click Load Sequence to load sequence data and create track (gray), click Load Data to load data into it
         •  
           
           
           
       • Bam - PacBio with softclipping
       • •  pacBio.bam
           chr1:9,971-10,034
           click Load Sequence to load sequence data and create track (gray), click Load Data to load data into it
           * note: sequence reads are imported in variable order, so your view may differ from the image below. Simply ensure that the gray portion of the reads
             is consistently on the left side and generally aligns to the gray portion of the reference sequence (the NNNN portion) at the bottom, as well as that no 
             artifacts are present in your view that are not in the image below. Check here for more details. 
         •  
       • Bed
         •  Bed_HomoSapien.bed
         •  Bed_HomoSapien.bed.gz
           chr1:1,699,059-1,912,174
           
           
           
       • BedGraph
         •  BedGraph_HomoSapien.bedgraph
         •  BedGraph_HomoSapien.bedgraph.gz
           chr1:386,893-7,895,983
           
       • BigBed
         •  BigBed_HomoSapien.bigbed
           chr1:1,735,393-2,060,653
           
       • BigWig
         •  BigWig_HomoSapien,bigwig
           chr1:1,735,393-2,060,653
           
       • GFF3
         •  GFF3_HomoSapien.gff3
         •  GFF3_HomoSapien.gff3.gz
           chr1:1,735,393-2,060,653
           

...